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Joint BioEnergy Institute Scientists Identify New Microbe-Produced Advanced Biofuel as an Alternative to Diesel Fuel

Commercial trucks in the U.S. burned approximately 22 billion gallons of diesel fuel in 2010. Replacing D2 diesel with a clean, green and renewable biofuel could substantially reduce the industry’s carbon footprint.

Commercial trucks in the U.S. burned approximately 22 billion gallons of diesel fuel in 2010. Replacing diesel with a clean, green and renewable biofuel could substantially reduce the industry’s carbon footprint. (Dept. of Transportation)

Researchers with the U.S Department of Energy (DOE)’s Joint BioEnergy Institute (JBEI) have identified a potential new advanced biofuel that could replace today’s standard fuel for diesel engines but would be clean, green, renewable and produced in the United States. Using the tools of synthetic biology, a JBEI research team engineered strains of two microbes, a bacteria and a yeast, to produce a precursor to bisabolane, a member of the terpene class of chemical compounds that are found in plants and used in fragrances and flavorings. Preliminary tests by the team showed that bisabolane’s properties make it a promising biosynthetic alternative to Number 2 (D2) diesel fuel.

“This is the first report of bisabolane as a biosynthetic alternative to D2 diesel, and the first microbial overproduction of bisabolene in Escherichia coli and Saccharomyces cerevisiae,” says Taek Soon Lee, who directs JBEI’s metabolic engineering program and is a project scientist with Lawrence Berkeley National Laboratory (Berkeley Lab)’s Physical Biosciences Division. “This work is also a proof-of-principle for advanced biofuels research in that we’ve shown that we can design a biofuel target, evaluate this fuel target, and produce the fuel with microbes that we’ve engineered.”

Lee is the corresponding author of a paper reporting this research in the journal Nature Communications entitled  “Identification and microbial production of a terpene-based advanced biofuel.” Pamela Peralta-Yahya is the lead author of this paper. Other co-authors are Mario Ouellet, Rossana Chan, Aindrila Mukhopadhyay and Jay Keasling

The rising costs and growing dependence upon foreign sources of petroleum-based fuels, coupled with scientific fears over how the burning of these fuels impacts global climate, are driving the search for carbon-neutral renewable alternatives. Advanced biofuels – liquid transportation fuels derived from the cellulosic biomass of perennial grasses and other non-food plants, as well as from agricultural waste – are highly touted for their potential to replace gasoline, diesel and jet fuels. Unlike ethanol, which can only be used in limited amounts in gasoline engines and can’t be used at all in diesel or jet engines, plus would corrode existing oil pipelines and tanks, advanced biofuels are drop-in fuels compatible with today’s engines, and delivery and storage infrastructures.

“We desperately need drop-in, renewable biofuels that can directly replace petroleum-derived fuels, particularly for vehicles that cannot be electrified,” says co-author Keasling, CEO of JBEI and a leading authority on advanced biofuels. “The technology we describe in our Nature Communications paper is a significant advance in that direction.”

From left, Pamela Peralta-Yahya, Taek Soon Lee and Mario Ouellet were key members of a team at the Joint BioEnergy Institute (JBEI) that demonstrated the potential of the chemical compound bisabolane to replace D2 diesel. (Photo by Roy Kaltschmidt, Berkeley Lab)

From left, Pamela Peralta-Yahya, Taek Soon Lee and Mario Ouellet were key members of a team at the Joint BioEnergy Institute (JBEI) that demonstrated the potential of the chemical compound bisabolane to replace D2 diesel. (Photo by Roy Kaltschmidt, Berkeley Lab)

JBEI is one of three Bioenergy Research Centers established by the DOE’s Office of Science in 2007. Researchers at JBEI are pursuing the fundamental science needed to make production of advanced biofuels cost-effective on a national scale. One of the avenues being explored is sesquiterpenes, terpene compounds that contain 15 carbon atoms (diesel fuel typically contains 10 to 24 carbon atoms).

“Sesquiterpenes have a high-energy content and physicochemical properties similar to diesel and jet fuels,” Lee says. “Although plants are the natural source of terpene compounds, engineered microbial platforms would be the most convenient and cost-effective approach for large-scale production of advanced biofuels.”

In earlier work, Lee and his group engineered a new mevalonate pathway (a metabolic reaction critical to biosynthesis) in both E. coli and S. cerevisiae that resulted in these two microorganisms over-producing a chemical compound called farnesyl diphosphate (FPP), which can be treated with enzymes to synthesize a desired terpene. In this latest work, Lee and his group used that mevalonate pathway to create bisabolene, which is a precursor to bisabolane.

“We proposed that the generality of the microbial FPP overproduction platforms would allow for the biosynthesis of sesquiterpenes,” Lee says. “Through multiple rounds of large-scale preparation in shake flasks, we were able to prepare approximately 20 milliliters of biosynthetic bisabolene, which we then hydrogenated to produce bisabolane.”

This diagram shows the steps for synthesizing bisabolane, an alternative to D2 diesel, from the chemical hydrogenation of bisabolene, which is metabolized in microbes via an engineered mevalonate pathway, (Image from Pamela Peralta-Yahya )

This diagram shows the steps for synthesizing bisabolane, an alternative to D2 diesel, from the chemical hydrogenation of bisabolene, which is metabolized in microbes via an engineered mevalonate pathway. (Image from Pamela Peralta-Yahya )

When they began this work, Lee and his colleagues did not know whether bisabolane could be used as a biofuel, but they targeted it on the basis of its chemical structure. Their first step was to perform fuel property tests on commercially available bisabolene, which comes as part of a mixture of compounds. Convinced they were onto something, the researchers then used biosynthesis to extract pure biosynthetic bisabolene from microbial cultures for hydrogenation into bisabolane. Subsequent fuel property tests on the bisabolane were again promising.

“Bisabolane has properties almost identical to D2 diesel but its branched and cyclic chemical structure gives it much lower freezing and cloud points, which should be advantageous for use as a fuel,” Lee says. “Once we confirmed that bisabolane could be a good fuel, we designed a mevalonate pathway to produce the precursor, bisabolene. This was basically the same platform used to produce the anti-malarial drug artemisinin except that we introduced a terpene synthase and further engineered the pathway to improve the bisabolene yield both in E. coli and yeast.”

Lee and his colleagues are now preparing to make gallons of bisabolane for tests in actual diesel engines, using the new fermentation facilities at Berkeley Lab’s Advanced Biofuels Process Demonstration Unit. The ABPDU is a 15,000 square-foot state-of-the art facility, located in Emeryville, California, designed to help expedite the commercialization of advanced next-generation biofuels by providing industry-scale test beds for discoveries made in the laboratory.

“Once the complete fuel properties of hydrogenated biosynthetic bisabolene can be obtained, we’ll be able to do an economic analysis that takes into consideration production variables such as the cost and type of feedstock, biomass depolymerization method, and the microbial yield of biofuel,” Lee says. “We will also be able to estimate the impact of byproducts present in the hydrogenated commercial bisabolene, such as farnesane and aromatized bisabolene.”

Ultimately, Lee and his colleagues would like to replace the chemical processing step of bisabolene hydrogenation with an alkene reductase enzyme engineered into the E.coli and yeast so that all of the chemistry is performed within the microbes.

“Enzymatic hydrogenation of this type of molecule is a very challenging project and will be a long term goal,” Lee says. “Our near-term goal is to develop strains of E.coli and yeast for use in commercial-scale fermenters. Also, we will be investigating the use of sugars from biomass as a source of carbon for producing bisabolene.”

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JBEI is a scientific partnership led by Lawrence Berkeley National Laboratory (Berkeley Lab) and including the Sandia National Laboratories, the UC campuses of Berkeley and Davis, the Carnegie Institution for Science, and the Lawrence Livermore National Laboratory. For more, visit www.jbei.org

Lawrence Berkeley National Laboratory addresses the world’s most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab’s scientific expertise has been recognized with 12 Nobel prizes. The University of California manages Berkeley Lab for the U.S. Department of Energy’s Office of Science. For more, visit www.lbl.gov.

Berkeley Lab’s ABPDU is operated with funds from DOE’s Office of Energy Efficiency and Renewable Energy through its Office of the Biomass Program. The ABPDU also received $17.7 million in funds through the American Recovery and Reinvestment Act. For more, visit http://abpdu.lbl.gov/index.html

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