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MaxBin: Automated Sorting Through Metagenomes

MaxBin, an automated software program for binning the genomes of individual microbial species from metagenomic sequences is available on-line through JBEI.

MaxBin is an automated software program for binning the genomes of individual microbial species from metagenomic sequences developed at the Joint BioEnergy Institute (JBEI).

On the Road to Artificial Photosynthesis

This TEM shows gold–copper bimetallic nanoparticles used as catalysts for the reduction of carbon dioxide, a key reaction for artificial photosynthesis.

New experimental results have revealed the critical influence of the electronic and geometric effects in the carbon dioxide reduction reaction.

Going to Extremes for Enzymes

Extremophiles thriving in thermal springs where the water temperature can be close to boiling can be a rich source of enzymes for the deconstruction of lignocellulose.

In the search for enzymes that can break lignocellulose down into biofuel sugars under the extreme conditions of a refinery, chemist Douglas Clark prospects for extremophilic microbes and engineers cellulases of his own.

Bionic Liquids from Lignin

Blake Simmon Ionic_Liquid thumb

Bionic liquids – solvents made from lignin and hemicellulose, two by-products of biofuel production – show great promise for liberating fermentable sugars from lignocellulose and improving the economics of biofuels refineries.

How Sweet It Is: New Tool for Characterizing Plant Sugar Transporters Developed at Joint BioEnergy Institute

A family of six nucleotide sugar transporters never before  described have been characterized in Arabidopsis, a model plant for research in advanced biofuels. (Photo by Roy Kaltschmidt)

JBEI researchers have developed a powerful new tool that can help advance the genetic engineering of “fuel” crops for clean, green and renewable bioenergy – an assay that enables scientists to identify and characterize the function of nucleotide sugar transporters, critical components in the biosynthesis of plant cell walls.

Postcards from the Photosynthetic Edge

Photosytem II utilizes a water-splitting manganese-calcium enzyme that when energized by sunlight catalyzes a four photon-step cycle of oxidation states that ultimately yields molecular oxygen.

Using the world’s most powerful x-ray laser, an international collaboration led by Berkeley Lab researchers took femtosecond “snapshots” of water oxidation in photosystem II, the only known biological system able to harness sunlight for splitting the water molecule. The results should help advance the development of artificial photosynthesis for clean, green and renewable energy.

The JBEI GT Collection: A New Resource for Advanced Biofuels Research

The JBEI GT Collection, the first glycosyltransferase clone collection specifically targeted for the study of plant cell wall biosynthesis, features GT clones of rice (shown here) and Arabidopsis plants. (Photo by Roy Kaltschmidt)

The JBEI GT Collection, the first glycosyltransferase clone collection specifically targeted for the study of plant cell wall biosynthesis, is expected to drive basic scientific understanding of GTs and better enable the manipulation of plant cell walls for the production of biofuels and other chemical products.

What About BOB?

The Berkeley Open Biofoundry – BOB – is a Berkeley Lab proposal to DARPA aimed at providing the science and technology that will enable the engineering of biological systems to produce valuable chemical products on a commercial scale.

Lignin-Feasting Microbe Holds Promise for Biofuels

Researchers at the Joint BioEnergy Institute (JBEI) have identified a rain forest microbe that feasts on the lignin in plant leaf litter, making it a potential ally for the cost-effective production of advanced biofuels.

One-Pot to Prep Biomass for Biofuels:

Joint BioEnergy Institute (JBEI) researchers save water and reduce pollution with the first one-pot, wash-free, process for the ionic liquid pretreatment and saccharification of switchgrass, one of the leading biofuel feedstock candidates.